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CLINICAL MICROBIOLOGY & DIAGNOSTIC LEARNING

微生物與檢驗判讀Microbiology & Diagnostic Analysis

整合 Web-CFU、Web-AST 與革蘭氏染色等既有教學工具,並加入互動菌種鑑定、生化試驗、培養基資料庫、AST 與抗藥性監測、醫學黴菌及病原菌基因體等外部專業資源。

Lab-developed CFU, AST and Gram-stain tools, complemented by interactive bacterial identification, biochemical references, culture media, antimicrobial resistance, medical mycology and pathogen genomics.

LAB-DEVELOPED & EXTERNAL IMAGE TOOLS

臨床微生物互動工具Interactive Microbiology & Diagnostic Tools

本站 CFU、AST、Gram Stain、生化鑑定、MIC/Checkerboard 與電泳、側向層析等工具均清楚標示教學或外部來源。

微生物學 · Microbiology

本站開發 · 教學原型Lab-developed educational tool

Web-Gram Stain Lite

革蘭氏染色與菌形判讀

Gram Stain Microscopy · Student vs Rule-based Suggestions

上傳 Gram stain 顯微照片,先完成學生判讀,再查看染色反應與菌形的規則式建議;支援 ROI、人工校正與標註匯出。教學原型,未經臨床驗證。Interpret Gram-stained microscopy images before revealing rule-based suggestions. Local color/shape analysis with ROI, manual review and exports; educational prototype, not clinically validated.

開始使用 Open teaching tool

微生物學 · 菌種生化鑑定

本站開發 · 教學原型Lab-developed educational tool

Web-Biochemical Identification

菌種生化試驗與鑑別推理

Gram Stain → Biochemical Tests → Differential Identification

自行輸入 Gram stain、Catalase、Coagulase、Oxidase、Indole、Urease 等結果,逐步比較候選菌;另有 8 組虛構案例與下一項鑑別試驗建議。Original browser-only teaching tool comparing Gram stain and biochemical results against simplified organism profiles, with synthetic cases, conflicting-reaction alerts and next-test suggestions.

開始使用 Open teaching tool

微生物學 · 抗生素感受性

本站開發 · 教學原型Lab-developed educational tool

Web-MIC & Checkerboard

MIC、雙藥 FICI 與 MBC 教學分析

Synthetic 96-Well Checkerboard · FICI · Separate Viable-Count MBC

可操作虛構 96 孔 Checkerboard,計算 A/B 單用 MIC、雙藥 FICI,另以獨立存活 CFU 資料示範 MBC。支援逐孔編輯、課堂隱藏答案與 CSV 匯出,僅供教學。Interactive synthetic 96-well checkerboard with single-agent MICs, FICI convention, local CSV export, hidden-answer practice and a separate viable-count exercise for MBC.

開始使用 Open teaching tool

電泳與分子檢驗 · Gel Electrophoresis

第三方網站 · TembricaExternal provider

Web-Gel · Gel Analyzer

DNA/蛋白質電泳影像與 Band 定量

Gel Band Analysis · External Learning Tool

前往 Tembrica Gel Analyzer(第三方網站):上傳電泳照片、辨識 Lane/Band、選用 DNA/蛋白質 Ladder、查看強度分布並匯出分析結果。外部網站功能與使用條款由提供者管理。External Tembrica Gel Analyzer: upload a gel image, detect lanes and bands, calibrate with DNA or protein ladders, and export analysis results. Subject to the external provider's terms.

前往外部網站 Visit external site

免疫分析與 POCT · Lateral Flow

第三方網站 · LFApp · Paskali et al.External provider

Web-LFA · LFApp

側向層析試紙 C/T 線訊號定量

Lateral Flow Assay Quantification · External Research Tool

前往 LFApp Mobile(第三方研究網站):試紙照片 ROI、C/T 線強度、背景校正與校正曲線。原作者公開的 Shiny 服務目前無法由本站確認連線狀態;若無法載入,可查看專案使用指南。External LFApp Mobile (R Shiny) for LFA image regions, control/test signal extraction, background correction and calibration. Its Shiny hosting availability has not been independently confirmed.

前往外部網站 Visit external site

BACTERIAL IDENTIFICATION

菌種鑑定與生化判讀Bacterial Identification & Biochemical Tests

從 Gram stain、培養觀察與生化反應出發,透過互動式教具與菌種資料庫訓練推理。Interpret microscopy, cultures and biochemical tests using guided identification exercises and strain databases.

免安裝教學工具Browser teaching app

MicroID Lab Guide

Michael Barnhart · ASM JMBE 2026

四階段未知細菌鑑定練習:初步形態、流程分支、生化檢驗選擇、最終候選菌種與矛盾結果確認。提供 67 項檢驗技術與培養基參考。Four-phase unknown-isolate identification using morphology, decision trees, biochemical test selection and consistency checks; 67 supporting lab references.

有正式教學論文及公開 GitHub 專案;目前不複製部署,也不視為臨床鑑定系統。原站即時連線狀態可能變動。Peer-reviewed educational project with public source; linked externally only, not clinically validated. Live app availability may vary.

線上微生物實驗模擬Virtual microbiology lab

Ontario Tech Virtual Lab

Ontario Tech University

以操作影片、培養與鏡檢照片及檢驗決策路徑,模擬細菌鑑定流程;錯誤選擇可返回重做。Virtual clinical-microbiology workflows with videos, photographic test results and identification decision trees.

教學原站有著作權;本站只連結,不轉載影片與圖片。Provider-owned multimedia; link rather than republish.

線上生化試驗查詢Biochemical test finder

BacDive API Test Finder

Leibniz Institute DSMZ

依 API 生化反應陽性/陰性組合搜尋相符的菌株資料,輔助理解生化試驗鑑別能力及菌株差異。Filter strain records by positive and negative biochemical/API test results to learn identification patterns and strain-level variation.

呈現的為資料庫菌株原始資料,可能與教科書典型反應不同;不能直接當成臨床菌種鑑定結論。Strain-level raw data can vary; not a validated clinical species identification output.

菌株資料庫Microbial strain database 延伸學習 Further reading

BacDive Strain Database

Leibniz Institute DSMZ

依菌名、菌株號、分類及生理生化特徵搜尋不同菌株的形態與培養資料。Look up organism names, strain identifiers, morphology, cultivation requirements and strain-level phenotypic data.

BacDive 以菌株層級彙整資料,不是臨床樣本鑑定演算法;引用時應標示資料來源。Strain-reference metadata, not a clinical sample identification algorithm.

CULTURE & CLASSIFICATION

培養基、菌種命名與標準方法Culture Media, Taxonomy & Laboratory Methods

查詢培養基配方、菌種分類與官方實驗程序;培養條件應依實驗室 SOP 決定。Look up culture media, taxonomy and procedural standards; use laboratory SOPs for actual practice.

培養基資料庫Culture media database

MediaDive

Leibniz Institute DSMZ

查培養基名稱、成分、配製配方與關聯菌株;含 medium finder、builder、單位換算等工具。Search culture medium recipes, ingredients and strain associations; includes medium builder and unit conversion.

以官方資料庫及實驗室 SOP 為準,不等同現行臨床標準作業指引。Reference database; follow local validated laboratory methods.

原核生物分類命名Prokaryotic nomenclature 延伸學習 Further reading

LPSN

Leibniz Institute DSMZ

查詢細菌名稱的合法命名、同物異名與重新分類,協助學生理解菌名更新。Check validly published bacterial names, synonyms and taxonomic revisions.

部分進階功能或最新資料需遵守站方存取政策。Some advanced or updated records can have provider access conditions.

官方互動課程Official learning series 延伸學習 Further reading

CDC Microbiology eLearning Series

US CDC Laboratory Training

包含顯微鏡、Gram stain、常見實驗操作及微生物檢驗基本能力的分單元教材。Training modules on microscopy, Gram staining and core clinical microbiology procedures.

供實驗室技能學習;課程內容不代表臺灣醫檢師國考的官方教材。Professional training reference, not an official Taiwan national-exam syllabus.

外部專業資源 External reference Taiwan CDC

疾管署傳染病標準檢驗方法手冊

法定傳染病檢驗方法與流程Infectious Disease Laboratory Methods

查詢臺灣疾管署最新版傳染病標準檢驗方法,作為微生物與病毒檢驗流程參考。Official Taiwan CDC manual covering infectious disease laboratory methods and workflows.

以主管機關最新版本及實驗室品質文件為準。Check the most recent applicable official version.

前往官方資源Visit official source · External site

AST & ANTIMICROBIAL RESISTANCE

抗生素感受性與抗藥性Antimicrobial Susceptibility & Resistance

MIC 分布、AST 判讀標準、品質管制及醫院 antibiogram,並明確區分表型與基因型。MIC distributions, AST standards, quality control, antibiograms and genotype-versus-phenotype interpretation.

MIC/抑菌圈分布資料庫MIC & zone distribution database

EUCAST MIC & Zone Distributions

EUCAST

查微生物/藥物配對的 MIC 和抑菌圈直徑分布、ECOFF 相關參考數值及圖表。Explore species–antimicrobial MIC and zone-diameter distributions, ECOFF-related data and histograms.

聚合分布不代表抗藥率,不可比較國家、時間或不同藥物的抗藥率;臨床 breakpoint 請另查官方表格。Aggregated distributions do not estimate resistance rates; clinical breakpoints are published separately.

免費 Windows 分析軟體Free Windows desktop software

WHONET 2026

WHO Collaborating Centre · WHONET

臨床微生物資料管理、AST/antibiogram 分析與抗藥性監測;官方提供 Windows 版本及 BacLink。Windows application for microbiology laboratory data, AST interpretation, antibiograms and AMR surveillance.

免費使用不等於開源;學生應用匿名或合成資料練習,並確認適用的 CLSI/EUCAST 年度。Free-to-use is not automatically open-source; use de-identified or synthetic datasets and appropriate standards.

AST 官方判讀與品管AST QC methodology 延伸學習 Further reading

EUCAST Disk Diffusion & QC

EUCAST

紙錠擴散法標準操作、參考菌株與品質管制範圍,補足 Web-AST 的教學判讀脈絡。Disk-diffusion methodology, QC strains and acceptance ranges to contextualize teaching AST measurements.

不同年度及菌/藥配對須依現行適用標準選擇,勿將本頁視為自動 AST 臨床判讀器。Consult applicable current standards for organism, drug and assay; not an automated clinical interpreter.

抗藥基因與線上分析AMR gene database & web analysis 延伸學習 Further reading

CARD / Resistance Gene Identifier

McMaster University · CARD

以 CARD 抗藥基因資料庫及線上 RGI,搜尋基因組序列的抗藥基因及相關變異。Curated antimicrobial-resistance gene references and web-based Resistance Gene Identifier analysis.

RGI 有線上輸入大小等限制,且基因型的推測不可取代實際 AST 表型;勿上傳未授權臨床序列。Web size limits apply; genotype predictions do not replace phenotypic AST. Avoid restricted clinical data uploads.

開源桌面/命令列分析Open-source CLI analysis 延伸學習 Further reading

NCBI AMRFinderPlus

NCBI / NIH

以核酸組裝序列或蛋白質註解辨識抗藥基因、已知抗藥相關突變及部分其他基因家族。Open-source AMR gene and resistance-associated mutation identification from assemblies or proteins.

為需安裝的分析工具,官方頁面另提供參考基因資料庫;不要誤認為一般免安裝上傳分析網站。Requires software installation; NCBI also hosts curated web references. Not a one-click browser analysis service.

外部專業資源 External reference EUCAST

EUCAST Clinical Breakpoints

抗生素感受性試驗判讀標準AST Clinical Breakpoint Tables

提供 MIC 與抑菌圈判讀表、S/I/R 定義及專家規則;需使用適用年份的最新版本。Clinical breakpoints, zone diameters, S/I/R definitions and interpretive guidance; check current version.

使用前確認現行版本、菌種、藥物及適用的標準系統。Confirm current version, organism, agent and applicable standard.

前往官方資源Visit official source · External site

MYCOLOGY & MICROSCOPY

黴菌、寄生蟲與顯微影像Mycology, Parasitology & Image Atlases

醫學黴菌鑑定、寄生蟲圖譜與微生物教學影像;使用前須注意著作權。Fungal identification, parasite atlases and public-health microscopy collections; respect image licenses.

醫學黴菌圖譜與測驗Fungal atlas & self-assessment

Mycology Online

Adelaide University

醫學重要真菌形態、鑑定檢索表、黴菌自我測驗及抗黴菌感受性參考。Medical mycology descriptions, mould identification keys, self-assessment and antifungal susceptibility references.

網站圖片多為 CC BY-NC,但部分屬第三方著作;本站僅外部連結,不自動重製。Many images use CC BY-NC, but third-party exceptions exist; link only.

公共衛生影像圖庫Public health image library 延伸學習 Further reading

CDC Public Health Image Library (PHIL)

US CDC

搜尋細菌、真菌、微生物實驗與電子顯微影像;可作為學生視覺辨識的補充圖庫。Explore public-health images of microorganisms, laboratory science and electron microscopy.

每張照片的授權可能不同;部分史料不反映最新醫學資訊,本站不複製圖檔。Image-level reuse rights vary and archival captions may be outdated; no image mirroring.

外部專業資源 External reference Taiwan CDC

臺灣疾管署寄生蟲圖譜

血液/腸道寄生蟲鏡檢圖譜Parasitology Image Atlases

包含血液與腸道寄生蟲圖譜、單張教學圖片,適合臨床鏡檢與寄生蟲學。Official Taiwan CDC blood and intestinal parasite atlases for microscopy and parasitology training.

教學參考請標示來源;轉載內容前確認官方使用規範。Credit the source and verify redistribution terms.

前往官方資源Visit official source · External site
外部專業資源 External reference US CDC

CDC DPDx

寄生蟲診斷圖譜與生活史Parasitic Disease Diagnosis

美國 CDC 寄生蟲影像、寄生蟲生活史、檢體處理與形態鑑別資料。CDC parasite identification, lifecycle illustrations and specimen-related laboratory guidance.

網站部分素材另有第三方著作權,引用前需個別確認。Some images have third-party copyrights; check case-by-case.

前往官方資源Visit official source · External site

PATHOGEN GENOMICS

病原菌基因體與分子流行病學Pathogen Genomics & Molecular Epidemiology

抗藥基因、MLST、菌株群集與演化圖譜,適合進階微生物及分子診斷課程。Resistance genes, MLST, outbreak clusters and phylogenomic visualization for advanced laboratory courses.

MLST/分子分型資料庫Molecular typing database 延伸學習 Further reading

PubMLST

University of Oxford / BIGSdb

查詢 MLST、等位基因型、菌株族群序列資料與已公開分型結果。Curated organism-specific MLST schemes, alleles, isolates and genomic typing records.

官方公告 2024 年 12 月 31 日後加入的資料需要註冊才可存取,請以站方最新政策為準。Registration is required for data added after 31 Dec 2024, per the current site notice.

菌株基因體群集分析Genomic surveillance web app 延伸學習 Further reading

Pathogenwatch

Centre for Genomic Pathogen Surveillance

瀏覽公開菌株基因組、MLST/cgMLST、抗藥基因預測及群集比較;上傳分析可能需登入。Explore public genomes, MLST/cgMLST, resistance predictions and clusters; account access may be needed to upload.

公開瀏覽與自行上傳的權限不同;教學示例應採公開或匿名資料。Public browsing and upload privileges differ; use public or de-identified datasets.

病毒序列變異分析Viral clade & QC web tool 延伸學習 Further reading

Nextclade

Nextstrain

於瀏覽器進行病毒核酸序列比對、變異呼叫、clade assignment 與基本品質檢查。In-browser viral sequence alignment, mutation calling, clade assignment and sequence quality checks.

僅支援平台提供合適參考資料集的病原,不能用於任意細菌臨床鑑定。Dataset-specific analyses; not a general bacterial clinical identification engine.

演化樹與疫情資料視覺化Genomic epidemiology visualization 延伸學習 Further reading

Microreact

Centre for Genomic Pathogen Surveillance

互動整合病原菌演化樹、採樣時間與地理資訊,可用公開資料示範院內或跨地區感染事件。Interactive phylogenetic trees, sample dates and geographic metadata for outbreak case studies.

公開分享前須去識別化,不應上傳患者資料或限制公開的接觸史。Remove patient identifiers and restricted epidemiological metadata before sharing.

病原菌/病毒基因體平台Pathogen genome resource center 延伸學習 Further reading

BV-BRC

Bacterial and Viral Bioinformatics Resource Center

免費瀏覽細菌與病毒基因組、註解、比較基因組與部分分析服務;進階分析可能需帳號。Public bacterial and viral genome resources, annotations and comparative analysis services, with account requirements for some jobs.

由資料庫與分析服務組成,功能需求及上傳政策依原站規定。Database and analysis-service availability and upload policies are provider-controlled.

資料來源與使用限制 Sources, attribution & limitations

所有新增專業資源均連結原發布單位,不在本站重製第三方圖譜、影片、程式或菌種資料。MicroID 及 Ontario Tech 的互動工具適合課堂練習,不是經臨床驗證的菌種鑑定系統。WHONET 為免費 Windows 軟體,不等於開源;BacDive 顯示菌株資料不保證與教科書典型特徵一致。

EUCAST MIC 分布不能當作各地抗藥率,抗藥基因分析亦不代表實際藥敏表型。查詢臨床 AST 時,應使用符合當期菌種、抗生素與版本的適用 CLSI/EUCAST 等標準。上傳檢體資料至任何外部平台前,須移除個資與可識別臨床資訊。

All resources link to their maintainers. Educational bacterial ID tools are not clinical devices. Free WHONET is not necessarily open-source; strain-level and MIC distribution data are not standalone clinical identification or resistance-rate estimates. Review current applicable AST standards and data policies before use.